; Gromacs version 3.3.3 topology file ; for Lewis-Wahnstrom ortho-terphenyl model. ; ; By ; Ulf R. Pedersen ; http://urp.dk ; ; See [J. Chem. Phys. 134, 114501 (2011)] and references within. [ defaults ] ; nb-function combinationrule 1 2 [ atomtypes ] ; type mass charge ptype sig [nm] eps [kJ/mol] A 76.768 0 A 0.483 4.98868324249896 ; Notes: ; Mass = 230.3038 / 3 = 76.768 ; eps = 600K * k_B = 600*1.3806504e-23*6.0221415e23/1000 = 4.98868324249896 [ moleculetype ] ; Name nrexcl OTP 7 ; A1 ; / ; A2 ; \ ; A3 [ atoms ] ; nr type resnr residue atom cgnr charge mass typeB chargeB massB 1 A 1 OTP A1 1 0.0 76.768 2 A 1 OTP A2 2 0.0 76.768 3 A 1 OTP A3 3 0.0 76.768 [ bonds ] ; ai aj funct c0 c1 (not used) 1 2 1 0.4830 300000 2 3 1 0.4830 300000 1 3 1 0.588063540422424 300000 ; To get a 75 degree angle, the length of the last constrain is ; 2*sin(75/360*2*pi/2)*0.4830 = 0.588063540422424 [ system ] ; Name OTP [ molecules ] ; Compound #mols OTP 324